One of the goals of my PhD was to construct some sort of database with all the results we generated. Unfortunately due to all sorts of logistical and bureaucratic reasons, plus a lack of interest of anyone to actually help i just settled to create a now forgotten Tableau public infographic. It’s a semi-interactive overview …

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Sequencing read analysis

Ever wondered how to assess the quality of your NGS data? But get confused about all the fancy tools? Well how about i told you you can assess a lot of problems before even looking at the mapping yet, just by extracting some basic coverage data from BAM files, and extracting the number of reads per sample.